PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA11g00790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 214aa    MW: 22908.2 Da    PI: 8.2687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA11g00790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-055476123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++C++ F ++  L  H++ H
  CA11g00790 54 YECQYCTREFANSQALGGHQNAH 76
                99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.79E-65181No hitNo description
Gene3DG3DSA:3.30.160.601.3E-45280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8845481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAELEFRAGT NTSGRLKLFG FNVIEDQEQE VESTKTSSGS PESGDMPTID GRKYECQYCT  60
REFANSQALG GHQNAHKKER QQLKRAQIQA SRNAYMRNPI ISAFAPPSHL LAPPGTLXTT  120
GAASTPSWVY VPRGTPPFHV SHGGRGVANF HYTSGMAEPN LVSVGPQHVK AHGGRVDGSN  180
GPSLNRLSRT DFGPNFDDAF GLDLHLSLAP AGS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546687.11e-156PREDICTED: zinc finger protein 6-like
TrEMBLK4BX911e-134K4BX91_SOLLC; Uncharacterized protein
STRINGSolyc05g009170.1.11e-134(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29941419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.11e-13C2H2 family protein